Solanum macrocarpon is an important vegetable native to Africa, with leaves and fruits. It is a potential source of income and nutrients that contribute to the nutritional balance of the local population's food intake. However, S. macrocarpon did not attract the interest of researchers in relation to other Solanum species. Indeed, knowledge of the genetic diversity of S. macrocarpon (Gboma Eggplant) in Africa is limited. Although agronomic variations and relationships generally reveal important traits of interest to breeders. This study attempts to estimate the genetic diversity of a collection of S. macrocarpon (32 accessions) from Burkina Faso using SSR markers. The results show that eleven (11) of the 22 SSR markers tested were informative for phylogenetic analysis and could serve as a perfect reference for diversity studies. The 11 polymorphic SSR primers selected amplified 22 alleles with an average of 2 per primer. The polymorphism information content (PIC) varied from 0.212 for emg01B17 to 0.437 for emd15D09. The genetic distances between the accessions studied varied from 0 to 0.68 and made it possible to distinguish three genetic groups. The expected Nei (He) heterozygosity for the genetic group ranged from 0.140 for group III to 0.261 for group I. The eleven pairs of SSR markers sufficiently discriminated against the accessions of S. macrocarpon. The results of this study will be useful for the conservation and genetic improvement of the S. macrocarpon species in Burkina Faso.
| Published in | International Journal of Genetics and Genomics (Volume 7, Issue 2) |
| DOI | 10.11648/j.ijgg.20190702.12 |
| Page(s) | 27-33 |
| Creative Commons |
This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited. |
| Copyright |
Copyright © The Author(s), 2019. Published by Science Publishing Group |
Genetic diversity, Polymorphism, S. macrocarpon, SSR Markers, Burkina Faso
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APA Style
Kabore Boukare, Sawadogo Boureima, Kiebre Mariam, Tiama Djakaridia, Kiebre Zakaria, et al. (2019). Genetic Diversity of a Collection of Solanum macrocarpon from Burkina Faso Revealed by Microsatellite Markers. International Journal of Genetics and Genomics, 7(2), 27-33. https://doi.org/10.11648/j.ijgg.20190702.12
ACS Style
Kabore Boukare; Sawadogo Boureima; Kiebre Mariam; Tiama Djakaridia; Kiebre Zakaria, et al. Genetic Diversity of a Collection of Solanum macrocarpon from Burkina Faso Revealed by Microsatellite Markers. Int. J. Genet. Genomics 2019, 7(2), 27-33. doi: 10.11648/j.ijgg.20190702.12
AMA Style
Kabore Boukare, Sawadogo Boureima, Kiebre Mariam, Tiama Djakaridia, Kiebre Zakaria, et al. Genetic Diversity of a Collection of Solanum macrocarpon from Burkina Faso Revealed by Microsatellite Markers. Int J Genet Genomics. 2019;7(2):27-33. doi: 10.11648/j.ijgg.20190702.12
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Download@article{10.11648/j.ijgg.20190702.12,
author = {Kabore Boukare and Sawadogo Boureima and Kiebre Mariam and Tiama Djakaridia and Kiebre Zakaria and Traore Renan Ernest and Sawadogo Mahamadou and Bationo-Kando Pauline},
title = {Genetic Diversity of a Collection of Solanum macrocarpon from Burkina Faso Revealed by Microsatellite Markers},
journal = {International Journal of Genetics and Genomics},
volume = {7},
number = {2},
pages = {27-33},
doi = {10.11648/j.ijgg.20190702.12},
url = {https://doi.org/10.11648/j.ijgg.20190702.12},
eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ijgg.20190702.12},
abstract = {Solanum macrocarpon is an important vegetable native to Africa, with leaves and fruits. It is a potential source of income and nutrients that contribute to the nutritional balance of the local population's food intake. However, S. macrocarpon did not attract the interest of researchers in relation to other Solanum species. Indeed, knowledge of the genetic diversity of S. macrocarpon (Gboma Eggplant) in Africa is limited. Although agronomic variations and relationships generally reveal important traits of interest to breeders. This study attempts to estimate the genetic diversity of a collection of S. macrocarpon (32 accessions) from Burkina Faso using SSR markers. The results show that eleven (11) of the 22 SSR markers tested were informative for phylogenetic analysis and could serve as a perfect reference for diversity studies. The 11 polymorphic SSR primers selected amplified 22 alleles with an average of 2 per primer. The polymorphism information content (PIC) varied from 0.212 for emg01B17 to 0.437 for emd15D09. The genetic distances between the accessions studied varied from 0 to 0.68 and made it possible to distinguish three genetic groups. The expected Nei (He) heterozygosity for the genetic group ranged from 0.140 for group III to 0.261 for group I. The eleven pairs of SSR markers sufficiently discriminated against the accessions of S. macrocarpon. The results of this study will be useful for the conservation and genetic improvement of the S. macrocarpon species in Burkina Faso.},
year = {2019}
}
TY - JOUR T1 - Genetic Diversity of a Collection of Solanum macrocarpon from Burkina Faso Revealed by Microsatellite Markers AU - Kabore Boukare AU - Sawadogo Boureima AU - Kiebre Mariam AU - Tiama Djakaridia AU - Kiebre Zakaria AU - Traore Renan Ernest AU - Sawadogo Mahamadou AU - Bationo-Kando Pauline Y1 - 2019/06/27 PY - 2019 N1 - https://doi.org/10.11648/j.ijgg.20190702.12 DO - 10.11648/j.ijgg.20190702.12 T2 - International Journal of Genetics and Genomics JF - International Journal of Genetics and Genomics JO - International Journal of Genetics and Genomics SP - 27 EP - 33 PB - Science Publishing Group SN - 2376-7359 UR - https://doi.org/10.11648/j.ijgg.20190702.12 AB - Solanum macrocarpon is an important vegetable native to Africa, with leaves and fruits. It is a potential source of income and nutrients that contribute to the nutritional balance of the local population's food intake. However, S. macrocarpon did not attract the interest of researchers in relation to other Solanum species. Indeed, knowledge of the genetic diversity of S. macrocarpon (Gboma Eggplant) in Africa is limited. Although agronomic variations and relationships generally reveal important traits of interest to breeders. This study attempts to estimate the genetic diversity of a collection of S. macrocarpon (32 accessions) from Burkina Faso using SSR markers. The results show that eleven (11) of the 22 SSR markers tested were informative for phylogenetic analysis and could serve as a perfect reference for diversity studies. The 11 polymorphic SSR primers selected amplified 22 alleles with an average of 2 per primer. The polymorphism information content (PIC) varied from 0.212 for emg01B17 to 0.437 for emd15D09. The genetic distances between the accessions studied varied from 0 to 0.68 and made it possible to distinguish three genetic groups. The expected Nei (He) heterozygosity for the genetic group ranged from 0.140 for group III to 0.261 for group I. The eleven pairs of SSR markers sufficiently discriminated against the accessions of S. macrocarpon. The results of this study will be useful for the conservation and genetic improvement of the S. macrocarpon species in Burkina Faso. VL - 7 IS - 2 ER -
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