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The Loss of Rad3 Induces the Diploidization of Tor2-287 Mutant to Promote the Cell Survival

Received: 4 February 2026     Accepted: 26 February 2026     Published: 16 March 2026
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Abstract

Maintenance of genomic integrity is essential for all organism that help to maintain the number of chromosomes during cell division. In yeast and other organisms, the diploidization of genome serves as a key survival strategy under changing environmental conditions. Fission yeast ATR homolog Rad3 and TOR complex protein Tor2 are phosphatidylinositol 3-kinase-related protein kinases (PIKKs) and are involved in various functions. Rad3 is a key regulator of DNA damage signaling pathway and is involved in the maintenance of genomic integrity. The TOR complex, TORC1 and TORC2, contain Tor2 and Tor1 protein kinase respectively as their major component are involved in regulating eukaryotic cell growth, metabolism, and survival, in response to nutrient, energy, and environmental cues. In this study, we observed the suppression of temperature sensitive phenotype of a tor2-287 mutation in rad3Δ background. The presence of azygotic asci and tetrad dissection analysis revealed the diploid nature of rad3Δ tor2-287 double mutant cells, which was further confirmed by flow cytometry (FACS) analysis. In addition, the tor2-287/tor2-287 homozygous and tor-287/tor2+ heterozygous diploid exhibit temperature sensitive and resistant phenotypes, respectively. The tetrad dissection analysis revealed that a wild type copy of the tor2+ and rad3+ genes was present in tor2-287 rad3Δ strain due to the diploid nature of these cells, thereby suppressing the temperature sensitive phenotype. Overall, our results demonstrate that the absence of rad3 suppresses the temperature sensitivity of tor2-287 mutant by maintaining the diploid nature of cells.

Published in International Journal of Genetics and Genomics (Volume 14, Issue 1)
DOI 10.11648/j.ijgg.20261401.14
Page(s) 39-44
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This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.

Copyright

Copyright © The Author(s), 2026. Published by Science Publishing Group

Keywords

Rad3, Tor2, Ploidy, S. pombe

1. Introduction
Eukaryotic cells maintain their number of chromosomes (ploidy) during cell division to prevent genomic instability. Under normal growth conditions, the fission yeast S. pombe grows as a haploid cell but can also be maintained as a diploid cell under specialized growth conditions. In yeast and various other organisms, diploidization serves as a key survival and adaptive strategy under stressful conditions or changing environments. This strategy helps the organism to increase genetic redundancy, boost the DNA repair mechanisms in order to avoid genomic instability, and the potential for sexual reproduction. Changes in ploidy through gain or loss of chromosome also results in aneuploidy that leads to chromosome instability, which is associated with cancer and drug resistant in fungi . In yeast, the polyploidy has been proposed to derive the cells for rapid adaptation through beneficial mutations and helps for the cell survival . Fission yeast Rad3 and Tor2 are phosphatidylinositol 3-kinase-related protein kinases (PIKKs) and are involved in diverse functions. ATR homolog Rad3 is a key regulator of DNA damage signaling pathway and is involved in the maintenance of genomic integrity . The fission yeast S. pombe contain two TOR complexes, TORC1 and TORC2, that contain Tor2 and Tor1 protein kinase respectively as their major component . Wat1/Lst8, a conserved protein, is present in both the complexes and has the ability to interact with the kinase domain of mTOR or Tor1 independently of the other factors . Tor2 kinase is an important component of TORC1 complex that is primarily involved in promoting cell growth and metabolism in response to nutrient availability . TORC1 also regulates ribosomal biogenesis and is involved in cell differentiation and in the maintenance of mitochondrial integrity . Disruption of wat1 leads to accumulation of reactive oxygen species that results in chromosomal breakage, leading to activation of checkpoint kinase Chk1 . The tor2-287 mutant cells exhibit temperature sensitivity, with a phenotype similar to that of nitrogen-starved cells . Here, we demonstrated that the absence of rad3 suppresses the temperature sensitivity of tor2-287 mutant by maintaining the diploid nature of cells and hence promote cell survival.
2. Methods
Yeast method: The S. pombe strains used in this study are listed in Table 1. Yeast Extract Medium (complete medium) and synthetic Edinburgh Minimal Media (EMM) were used for growing the cells. For the spotting assay, approximately 107 cells were serially diluted and spotted on a complete media plate. The homozygous and heterozygous diploid strains were constructed by the intragenic complementation of ade6-210 and ade6-216 alleles of ade6 gene as described earlier .
Table 1. Strains used in this study.

Strain

Genotype

Source

SP3

h+ leu1-32

Lab stock

SH1695

h+ leu1-32 ura4D18 rad3:: ura4

This study, derived from FY14154 (NBRP)

SH1692

h- ura4D18 tor2-287:: hygR

This study, derived from FY40338 (NBRP)

SH1701

h+ leu1-32 ura4D18 tor2-287:: hygR rad3:: ura4 (exist as diploid)

This study

SH1836

h leu1-32 ura4D18 tor2-287:: hygR rad3:: ura4 (exist as diploid)

This study

SH2094

h+/h- leu1-32/leu1+ tor2-287:: hygR/tor2-287:: hygR ade6-216/ade6-210

This study

SH2096

h+/h- leu1-32/leu1+ tor2-287:: hygR/tor2+ ade6-216/ade6-210

This study

SH1658

h+/h- leu1-32/leu1-32 ade6-216/ade6-210

Lab stock

Table 2. Percent sporulation in various strains.

S.No.

Genotype

Total no. of cells

Azygotic asci

Zygotic asci

% azygotic asci

1

Wild type

251

0

1

0.4%

2

rad3::ura4

222

0

1

0.45%

3

tor2-287::hygR

212

0

0

0

4

tor2-287::hygR rad3::ura4

295

56

12

19%

5

Wild type diploid

185

44

9

23.8%

Microscopy: For tetrad analysis, the cells were allowed to sporulate on a minimal media plate, and spores from 16 asci in two independent crosses were dissected on a YES plate using an Axioscope A1 tetrad dissection microscope (Zeiss). The DIC images of sporulation were captured using an Olympus CKX53 microscope.
Flow cytometry: Cells were grown at 25°C till mid log phase. After centrifugation, the cells were collected and fixed with 70% ethanol. Samples were processed for Flow cytometry analysis as described earlier and analysed with a Becton-Dickinson FACS Calibur.
3. Result and Discussion
Absence of Rad3 suppresses the temperature sensitive phenotype of tor2-287 mutant with azygotic ascire. n sensitive phenotype of tor2-287 mutant.
In a genetic interaction study involving rad3 and tor2, we observed that the rad3Δ tor2-287 double mutant cells (in two different strains) were able to form colonies at non-permissive temperature as compared to tor-287 single mutant that exhibits a temperature-sensitive phenotype (Figure 1A), suggesting the suppression of temperature sensitive phenotype of tor2-287 mutant in the absence of rad3. Further examination of these tor2-287 rad3Δ cells revealed the large-sized morphology at permissive and non-permissive temperature. Under minimal media conditions, the S. pombe cells form zygotic asci by the conjugation of two haploid cells, whereas pre-existing diploid cells form linear azygotic asci without prior cell conjugation. In order to further evaluate the sporulation, we grew the cells on minimal media plates and monitored them under the microscope. As shown in Figure 1B, approximately 24% of wild type diploid cells exhibit azygotic asci (Table 2). Interestingly, 19% of tor2-287 rad3Δ cells also showed azygotic asci (Figure 1B and Table 2). In comparison, the wild type and rad3Δ cells showed only 0.4%, 0.45% azygotic asci, respectively, while in tor2Δ cells, we could not observe asci (Figure 1B and Table 2). These results indicate the diploid nature of tor2-287 rad3Δ cells.
Figure 1. The double mutation of rad3Δ tor2-287 suppresses temperature sensitive phenotype with azygotic asci. (A) Absence of rad3 suppresses the temperature sensitivity of tor2-287 mutant. Indicated strains were grown at 25°C till mid log phase, serially diluted, and spotted on rich media (YES) plates. Plates were allowed to grow at indicated temperature for 3-4 days before taking a photograph. The asterisk denotes a probable diploid nature of cells. The results shown here are from one set of experiment out of three independent experiments (B) Indicated strains were grown on an EMM agar plate, and a DIC image of cells containing spores was monitored under a microscope. For each strain, more than 200 cells were monitored for the calculation of percent azygotic asci.
The double mutant of tor2-287 rad3Δ cells are diploid in nature
To further confirm the genotype of these haploid spores, we dissected the azygotic asci obtained from tor2-287 rad3Δ mutant cells in two independent experiments. Each germinating spores were checked for its genotype by replica plating on uracil deficient plate, hygromycin containing plate, and temperature sensitive phenotype. We observed a 2:2 segregation of tor2-287:: hygR and rad3:: ura4 gene in all the asci except two (Figure 2). Consistently, all the hygromycin resistant colonies exhibited temperature sensitive phenotype and were unable to grow on plates lacking uracil, indicating the tor2-287 phenotype. These results suggest that the spores might have been generated from diploid cells. The presence of two asci with all four spores having a genotype of rad3Δ (ura4+) could be due to the homozygosing, a process in which a double strand break, followed by recombination, can lead to complete loss of one allelic copy, resulting in asymmetric segregation (4:0 or 0:4) as has been reported earlier .
Figure 2. The double mutant of tor2-287 rad3Δ cells are diploid in nature and exhibits 2:2 segregation. The asci from rad3Δ tor2-287 double mutant were dissected on a YES plate, and replica plated on the indicated plates. Parental strains were also patched and incubated at 25oC or 36oC for 3-4 days before taking a photograph. The results shown here are from one set of dissection out of two independent experiments as described in Methods.
In addition, the diploid nature of rad3Δ tor2-287 double mutant was also checked by FACS analysis. As shown in Figure 3, a peak corresponding to 2C DNA content was observed in 87% of diploid control cells and 66% of rad3Δ tor2-287 double mutant cells. In comparison, the percentage of cells containing 2C DNA content in rad3Δ and tor2-287 single mutant was 26% and 17%, respectively, while in the wild type, most of the cells showed a single peak corresponding to 1C DNA content, suggesting the diploid nature of rad3Δ tor2-287 double mutant cells.
Figure 3. FACS analysis of cells. Indicated strains were grown at 25°C, stained with propidium iodide, and FACS analysis was performed using BD FACS Calibre for the analysis of DNA content. Multiple independent experiments were performed, and the results shown here are from one set of experiments.
The homozygous tor2-287 diploid mutant cells could not suppress the temperature sensitive phenotype
Further to check whether homozygous tor2-287 diploid cells can also suppress the temperature sensitive phenotype, we constructed homozygous and heterozygous diploids of tor2-287 mutant by genetic crosses. We observed that, the homozygous diploid of tor2-287/tor2-287 exhibit temperature sensitivity while heterozygous diploid of tor2-287/tor2+ were able to form colonies at non permissive temperature (Figure 4A). Furthermore, the sporulation analysis revealed azygotic asci in tor2-287 homozygous and heterozygous strain (Figure 4B). These results suggest that the suppression of temperature sensitive phenotype in tor2-287 rad3Δ cells are due to the formation of diploid that also contain a wild type copy of tor2+ and rad3+ and hence gave a 2:2 segregation in our tetrad dissection analysis (Figure 2).
Figure 4. The phenotypic analysis of homozygous and heterozygous diploid strains. (A) The homozygous and heterozygous diploid strains were constructed by genetic crosses as described in Methods, and cells were grown at 25°C till mid log phase, serially diluted, and spotted on rich media (YES) plates. Plates were allowed to grow at the indicated temperature for 3-4 days before taking a photograph. (B) Indicated strains were grown on an EMM agar plate, and a DIC image of cells containing spores was monitored under a microscope.
Spontaneous diploidization in yeast mostly occurs due to endo-reduplication or mating type switching and could be advantageous for growth under certain stressful conditions . In this study, we hypothesize that the cell containing rad3Δ in tor2-287 mutant background undergoes diploidization that also contain a wild type copy of rad3+ and tor2+ gene and hence promotes cell survival. This phenotype was observed only when haploid rad3Δ cells were crossed with haploid tor2-287:: hygR, resulting self diploidization. The results presented here cannot rule out the possibility of secondary suppressor mutation or gene conversion event that can also contribute to phenotypic suppression. In a previous study, the spontaneous diploidization was proposed to act as a dosage suppressor to rescue the growth defects associated with spindle pole body mutants that have defective centrosomes . In budding yeast, the high frequency of self diploidization of def1Δ cells has also been reported . In a recent study, the SSD1 has been identified as a genetic factor that reduces auto diploidization in S. cerevisiae .
Abbreviations

FACS

Flow Cytometry

YEA

Yeast Extract Agar

EMM

Edinburgh Minimal Media

YES

Yeast Extract with Suppliment

DNA

Deoxyribonucleic Acid

DIC

Differential Interference Contrast Microscopy

PIKK

Phosphatidylinositol 3-Kinase-Related Protein Kinase

Acknowledgments
We thank Dr. Jagmohan Singh and lab members for helpful discussions, and yeast resource center NBRP, Japan for providing the strains as mentioned in the strain list. Our special thanks to the Sophisticated Analytical Instrument Facility (SAIF) of CDRI for FACS analysis. The CDRI communication number for this manuscript is 11128.
Funding
The work was supported by the grants from the Council of Scientific and Industrial Research, New Delhi, India (MLP2044).
Author Contributions
Monika Deoralia: Data curation, Formal Analysis, Investigation, Methodology, Validation, Writing – original draft
Lalita Panigrahi: Formal Analysis, Methodology, Resources
Shakil Ahmed: Conceptualization, Funding Acquisition, Project Administration, Supervision, Writing – review & editing
Conflicts of Interest
The authors declare no competing interests.
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    Deoralia, M., Panigrahi, L., Ahmed, S. (2026). The Loss of Rad3 Induces the Diploidization of Tor2-287 Mutant to Promote the Cell Survival. International Journal of Genetics and Genomics, 14(1), 39-44. https://doi.org/10.11648/j.ijgg.20261401.14

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    Deoralia, M.; Panigrahi, L.; Ahmed, S. The Loss of Rad3 Induces the Diploidization of Tor2-287 Mutant to Promote the Cell Survival. Int. J. Genet. Genomics 2026, 14(1), 39-44. doi: 10.11648/j.ijgg.20261401.14

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    AMA Style

    Deoralia M, Panigrahi L, Ahmed S. The Loss of Rad3 Induces the Diploidization of Tor2-287 Mutant to Promote the Cell Survival. Int J Genet Genomics. 2026;14(1):39-44. doi: 10.11648/j.ijgg.20261401.14

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  • @article{10.11648/j.ijgg.20261401.14,
      author = {Monika Deoralia and Lalita Panigrahi and Shakil Ahmed},
      title = {The Loss of Rad3 Induces the Diploidization of Tor2-287 Mutant to Promote the Cell Survival},
      journal = {International Journal of Genetics and Genomics},
      volume = {14},
      number = {1},
      pages = {39-44},
      doi = {10.11648/j.ijgg.20261401.14},
      url = {https://doi.org/10.11648/j.ijgg.20261401.14},
      eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ijgg.20261401.14},
      abstract = {Maintenance of genomic integrity is essential for all organism that help to maintain the number of chromosomes during cell division. In yeast and other organisms, the diploidization of genome serves as a key survival strategy under changing environmental conditions. Fission yeast ATR homolog Rad3 and TOR complex protein Tor2 are phosphatidylinositol 3-kinase-related protein kinases (PIKKs) and are involved in various functions. Rad3 is a key regulator of DNA damage signaling pathway and is involved in the maintenance of genomic integrity. The TOR complex, TORC1 and TORC2, contain Tor2 and Tor1 protein kinase respectively as their major component are involved in regulating eukaryotic cell growth, metabolism, and survival, in response to nutrient, energy, and environmental cues. In this study, we observed the suppression of temperature sensitive phenotype of a tor2-287 mutation in rad3Δ background. The presence of azygotic asci and tetrad dissection analysis revealed the diploid nature of rad3Δ tor2-287 double mutant cells, which was further confirmed by flow cytometry (FACS) analysis. In addition, the tor2-287/tor2-287 homozygous and tor-287/tor2+ heterozygous diploid exhibit temperature sensitive and resistant phenotypes, respectively. The tetrad dissection analysis revealed that a wild type copy of the tor2+ and rad3+ genes was present in tor2-287 rad3Δ strain due to the diploid nature of these cells, thereby suppressing the temperature sensitive phenotype. Overall, our results demonstrate that the absence of rad3 suppresses the temperature sensitivity of tor2-287 mutant by maintaining the diploid nature of cells.},
     year = {2026}
    }
    

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  • TY  - JOUR
    T1  - The Loss of Rad3 Induces the Diploidization of Tor2-287 Mutant to Promote the Cell Survival
    AU  - Monika Deoralia
    AU  - Lalita Panigrahi
    AU  - Shakil Ahmed
    Y1  - 2026/03/16
    PY  - 2026
    N1  - https://doi.org/10.11648/j.ijgg.20261401.14
    DO  - 10.11648/j.ijgg.20261401.14
    T2  - International Journal of Genetics and Genomics
    JF  - International Journal of Genetics and Genomics
    JO  - International Journal of Genetics and Genomics
    SP  - 39
    EP  - 44
    PB  - Science Publishing Group
    SN  - 2376-7359
    UR  - https://doi.org/10.11648/j.ijgg.20261401.14
    AB  - Maintenance of genomic integrity is essential for all organism that help to maintain the number of chromosomes during cell division. In yeast and other organisms, the diploidization of genome serves as a key survival strategy under changing environmental conditions. Fission yeast ATR homolog Rad3 and TOR complex protein Tor2 are phosphatidylinositol 3-kinase-related protein kinases (PIKKs) and are involved in various functions. Rad3 is a key regulator of DNA damage signaling pathway and is involved in the maintenance of genomic integrity. The TOR complex, TORC1 and TORC2, contain Tor2 and Tor1 protein kinase respectively as their major component are involved in regulating eukaryotic cell growth, metabolism, and survival, in response to nutrient, energy, and environmental cues. In this study, we observed the suppression of temperature sensitive phenotype of a tor2-287 mutation in rad3Δ background. The presence of azygotic asci and tetrad dissection analysis revealed the diploid nature of rad3Δ tor2-287 double mutant cells, which was further confirmed by flow cytometry (FACS) analysis. In addition, the tor2-287/tor2-287 homozygous and tor-287/tor2+ heterozygous diploid exhibit temperature sensitive and resistant phenotypes, respectively. The tetrad dissection analysis revealed that a wild type copy of the tor2+ and rad3+ genes was present in tor2-287 rad3Δ strain due to the diploid nature of these cells, thereby suppressing the temperature sensitive phenotype. Overall, our results demonstrate that the absence of rad3 suppresses the temperature sensitivity of tor2-287 mutant by maintaining the diploid nature of cells.
    VL  - 14
    IS  - 1
    ER  - 

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Author Information
  • Biochemistry and Structural Biology Division, CSIR- Central Drug Research Institute, Lucknow, India;Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India

  • Biochemistry and Structural Biology Division, CSIR- Central Drug Research Institute, Lucknow, India

  • Biochemistry and Structural Biology Division, CSIR- Central Drug Research Institute, Lucknow, India;Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India